Run OPTAR on Command Lines :

Step 1 : OPTAR_Text_Mining Protein_List.txt keyword.txt No_Drug.txt PPI_Pro.txt PPI_Freq.txt

Step 2 : OPTAR_PPI_Summary No_Drug.txt PPI_Pro.txt PPI_Freq.txt Final_Ranking.txt

Step 3 : OPTAR_Pocket_Define AF_UBE2J1_H

Step 4 : OPTAR_Pocket_Refine AF_UBE2J1_H 80 90

Step 5 : OPTAR_ECharts UBE2J1 10 show_num optar_ppi.txt optar_ppi_top_10.html

OPTAR Citation :

OPTAR: A computational tool for target discovery based on disease correlation inference from literature of interacting proteins

Xiao Yuan#, Siyu Zhou#, Jiayi Yu#, Cheng Luo, Hao Zhang*
PMID : XXXXX

https://www.maxapress.com/article/doi/10.48130/targetome-0026-0017
DOI : 10.48130/targetome-0026-0017